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Week 6Section 1

Topological Analysis

Understanding protein topology and contact networks

30-45 minSection0/1 Activities Complete
Overview

Understanding protein topology and contact networks

Activities & Tasks
1

Contact Map Generation

Create and analyze protein contact networks

coding
Start
Week Resources

Required Readings

Protein knots and fold complexity (Taylor, 2000)
Read
Protein contact maps tutorial
Read

Exercises

Coding Exercise

Build contact map with NetworkX from PDB coordinates

Visualization

Plot contact map heatmap in Matplotlib

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