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Week 8Intermediate

Week 8 Coding Exercise

Molecular Dynamics & Simulation

45-60 minPython
Exercise Overview

Run toy MD of alanine dipeptide with OpenMM

Setup Instructions
  1. 1
    Install required Python packages (BioPython, NumPy, Matplotlib)
  2. 2
    Download the starter code and data files
  3. 3
    Set up your development environment
Tasks to Complete
Complete the main coding exercise as described
Test your implementation with provided test cases
Add comments and documentation to your code
Create visualizations of your results
Helpful Resources
BioPython DocumentationOpen
NumPy User GuideOpen
Matplotlib TutorialsOpen
Exercise Progress
Completion Status0% Complete
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